Welcome to cryoSPAX!¤
CryoSPAX is a small library built to support cryoJAX projects that implement single-particle analysis (SPA) at scale. It seeks to simplify new cryo-EM research, rather than providing end-to-end single particle analysis workflows.
Installation¤
If you are not installing JAX with GPU or TPU support, installing cryospax in a fresh uv environment is as simple as
uv venv --python=3.11 ~/path/to/venv/
source ~/path/to/venv/bin/activate
uv pip install cryospax
If you are installing JAX with GPU or TPU support, first follow the JAX installation instructions. It may also be necessary to directly follow the cryojax installation instructions for installs with advanced cryoJAX features.
To install cryospax in development mode, run
git clone https://github.com/michael-0brien/cryospax
cd cryospax
git checkout dev
uv pip install -e '.[dev,tests]'
uv run pre-commit install